miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|4163789|gb|AU006405.1|AU006405 TTCAAAAGGGGTCGCCCTCCGAACATCACTTCGAGCATCCCACTCCGTAGTAGGCGCGCAAACACCTCCGCCGTTAGTCC
CATCACTCTCTTTGGCCAGCCCATACCGTGGGTCTCGAAGGTCAAATATCTAGGCGTCACCCTCGACAGAGGGATGACAT
TCCGTCCCCATATAAAAACGGTACGCGACCGCGCCGCGTTTATTCTAGGACGACTCTATCCAATGCTTTGTAGTCGAAGC
AAACTGTCCCTCCGCAATAAGGTAACTCTCTACAAAACTTGTATACGCCCCGTCATGACGTATGCAAGCGTAGTGTTCGC
TCACTCAGCCCGCACCCACTTGAAATCCCTTCAGGTTATTCAATCACGATTCTGCAGGATAGCCGTCGGAGCGCCTTGGT
TCCTTAGGAATGTGGATCTCCACGACGACCTGGAGCTCGACTCTTTTAGTAAGTATCTACAGTCGGCATCGCTACGCCAT
TTTGAGAAGGCGGCACGACATGAGAACCCTCTCATCGTAGCCGCTGGAAATTACATACCCGACCCAGTAGACCGAATGGT
AAACCGTCGACGTCGCCCAAAGCACGTCATTACGGATCCTCCTGATCCATTAACGGTGCTTTTAGGCACCACAAGCACCG
GTCACCGTCCTCGTCGAACCCGTCGCTTGCGAGAAGGGCTCGACGAGCGAACTAACCCATAGACACAGCCCACTGAGTTT
CTCGCCGGATCTTCTCAGTGGGTCGCGTTTCCGATCCGGTGGTAGATTCAGCGAAGACTGCTCTTGCTAGGGTCAGTGTT
AGCAACTCTCCGGTTGAGCCCGCGAGCT




Most similar to sp|Q9NBX4|RTXE_DROME

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q9NBX4|RTXE_DROME Probable RNA-directed DNA polymerase from
            transposon X-element OS=Drosophila melanogaster GN=ORF2
            PE=3 SV=1
          Length = 908

 Score =  117 bits (292), Expect = 1e-25
 Identities = 64/175 (36%), Positives = 97/175 (55%)
 Frame = +1

Query: 79   PITLFGQPIPWVSKVKYLGVTLDRGMTFRPHIKTVRDRAAFILGRLYPMLCSRSKLSLRN 258
            P+ +   P+P  +  KYLGV LDR +TF  H+  +R R    + + Y +L SRSKLSL N
Sbjct: 731  PVYIEEVPVPQPNAAKYLGVLLDRRLTFSKHVTDIRTRLRAKVAKHYWLLSSRSKLSLSN 790

Query: 259  KVTLYKTCIRPVMTYASVVFAHSARTHLKSLQVIQSRFCRIAVGAPWFLRNVDLHDDLEL 438
            K+T+YK  + P   Y   ++  +  +H+K +Q IQ++  R+  G  WF+RN  LH DL+L
Sbjct: 791  KLTIYKQILAPNWKYGCQIWGLACDSHIKRIQAIQNKVARLITGCEWFVRNTTLHRDLKL 850

Query: 439  DSFSKYLQSASLRHFEKAARHENPLIVAAGNYIPDPVDRMVNRRRRPKHVITDPP 603
             +    +   S R+ ++  RH N L  A     P    R +N RR+P+ +IT  P
Sbjct: 851  ATVFDEINKHSSRYHDRLERHRNRLASALNRSRP---PRRLN-RRQPRDLITRSP 901